{
  "_id": "6a0f70a5acfb0bcc41c5f564",
  "Package": "VDJgermlines",
  "Type": "Package",
  "Title": "Variable, Diversity and Joining Sequences from Various Species",
  "Version": "0.1",
  "Date": "2018-12-10",
  "Author": "Alexander Yermanos",
  "Maintainer": "Alexander Yermanos <ayermanos@gmail.com>",
  "Description": "Contains variable, diversity, and joining sequences and\naccompanying functions that enable both the extraction of and\ncomparison between immune V-D-J genomic segments from a variety\nof species. Sources include IMGT from MP Lefranc (2009)\n<doi:10.1093/nar/gkn838> and Vgenerepertoire from publication\nDN Olivieri (2014) <doi:10.1007/s00251-014-0784-3>.",
  "License": "GPL-2",
  "LazyData": "true",
  "Encoding": "UTF-8",
  "RoxygenNote": "5.0.1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-21 07:25:43 UTC",
    "User": "root"
  },
  "Repository": "https://alexyermanos.r-universe.dev",
  "Date/Publication": "2018-12-18 22:30:32 UTC",
  "RemoteUrl": "https://github.com/cran/VDJgermlines",
  "RemoteRef": "HEAD",
  "RemoteSha": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
  "MD5sum": "d8065e8875560107c883e446c17c6426",
  "_user": "alexyermanos",
  "_type": "src",
  "_file": "VDJgermlines_0.1.tar.gz",
  "_fileid": "2f8e24e8d83d7585a3f81552704527c11b4f94a762a85caf6943798e0a104182",
  "_filesize": 289088,
  "_sha256": "2f8e24e8d83d7585a3f81552704527c11b4f94a762a85caf6943798e0a104182",
  "_created": "2026-05-21T07:25:43.000Z",
  "_published": "2026-05-21T20:52:53.933Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77266508822,
      "time": 122,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7129700243"
    },
    {
      "job": 77266508873,
      "time": 108,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7129696310"
    },
    {
      "job": 77266509200,
      "time": 142,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7129697686"
    },
    {
      "job": 77266509276,
      "time": 170,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7129704590"
    },
    {
      "job": 77266508657,
      "time": 139,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7129662109"
    },
    {
      "job": 77266508125,
      "time": 100,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7146948644"
    },
    {
      "job": 77266508624,
      "time": 101,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7129693891"
    },
    {
      "job": 77266508881,
      "time": 70,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7129684172"
    },
    {
      "job": 77266508656,
      "time": 85,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7129689170"
    }
  ],
  "_buildurl": "https://github.com/r-universe/alexyermanos/actions/runs/26211729973",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/VDJgermlines",
  "_commit": {
    "id": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
    "author": "Alexander Yermanos <ayermanos@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1\n",
    "time": 1545172232
  },
  "_maintainer": {
    "name": "Alexander Yermanos",
    "email": "ayermanos@gmail.com",
    "login": "alexyermanos",
    "description": "",
    "uuid": 6627996
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Depends"
    },
    {
      "package": "stringdist",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "alexyermanos",
      "count": 1,
      "uuid": 6627996
    }
  ],
  "_userbio": {
    "uuid": 6627996,
    "type": "user",
    "name": "Alex Yermanos"
  },
  "_downloads": {
    "count": 176,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/VDJgermlines"
  },
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/VDJgermlines.html",
    "manual.pdf"
  ],
  "_realowner": "alexyermanos",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1",
      "date": "2018-12-18"
    }
  ],
  "_exports": [
    "extractSequencesR",
    "VDJheatmap",
    "VDJphylo"
  ],
  "_datasets": [
    {
      "name": "VDJgermlines",
      "title": "VDJgermlines",
      "object": "VDJgermlines",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sequence",
        "names",
        "species",
        "chain",
        "accession",
        "species_name_official",
        "source",
        "strain"
      ],
      "rows": 7285,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "extractSequencesR",
      "title": "Extracts the germline genes of interest and stores them as a dataframe",
      "topics": [
        "extractSequencesR"
      ]
    },
    {
      "page": "VDJgermlines",
      "title": "VDJgermlines",
      "topics": [
        "VDJgermlines"
      ]
    },
    {
      "page": "VDJheatmap",
      "title": "Calculates the distance between VDJ germlines of interest and produces a matrix that can be used for further analysis or viewed using Heatmap/pheatmap/ComplexHeatmap.",
      "topics": [
        "VDJheatmap"
      ]
    },
    {
      "page": "VDJphylo",
      "title": "Infers basic phylogenetic trees of VDJ germlines of interest with basic distance methods.",
      "topics": [
        "VDJphylo"
      ]
    }
  ],
  "_rundeps": [
    "ape",
    "digest",
    "lattice",
    "nlme",
    "Rcpp",
    "stringdist"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "vdjgermlines",
  "_universes": [
    "alexyermanos"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1",
      "date": "2026-05-21T07:27:46.000Z",
      "distro": "noble",
      "commit": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
      "fileid": "966e52dcb851a99db83882d999186c68ef26ba9e0f47d7d78d6edeb770839796",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/alexyermanos/actions/runs/26211729973"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1",
      "date": "2026-05-21T07:27:35.000Z",
      "distro": "noble",
      "commit": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
      "fileid": "c80496f2cbbe802766e30f20287ea15b441cd7c1a2ce1cd99e17c76d68faa8ab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/alexyermanos/actions/runs/26211729973"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1",
      "date": "2026-05-21T07:27:42.000Z",
      "commit": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
      "fileid": "b1961e893d4356e726ebc5d4c878ee8c8f2590419a853eb34f35303922b37016",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/alexyermanos/actions/runs/26211729973"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1",
      "date": "2026-05-21T07:28:00.000Z",
      "commit": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
      "fileid": "198ead49a3b916050d68bb4713b5c80c0a53533e1714912392cd95725a6a49f7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/alexyermanos/actions/runs/26211729973"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1",
      "date": "2026-05-21T20:52:35.000Z",
      "commit": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
      "fileid": "807574b7b8104ddf0fc3772f7f5764ae4291242d05778440832ec7f76b108f29",
      "status": "success",
      "buildurl": "https://github.com/r-universe/alexyermanos/actions/runs/26211729973"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1",
      "date": "2026-05-21T07:27:23.000Z",
      "commit": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
      "fileid": "2405d5df0eed940b0647811f0d294287dbea6b6cac1106a270c5469ff3b9d82e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/alexyermanos/actions/runs/26211729973"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1",
      "date": "2026-05-21T07:26:51.000Z",
      "commit": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
      "fileid": "33b76d34ab0541dc3effe2766911925bb25893b18136eea888e0ca55d709d909",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/alexyermanos/actions/runs/26211729973"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1",
      "date": "2026-05-21T07:27:05.000Z",
      "commit": "a2e337c58b19d8a8d3166e392ec6bd15a0e85578",
      "fileid": "9b586a9018600dd51e966951af0178352a1e4416ddae0b0c5c487dfd7b327e2c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/alexyermanos/actions/runs/26211729973"
    }
  ]
}