Package: VDJgermlines 0.1

VDJgermlines: Variable, Diversity and Joining Sequences from Various Species

Contains variable, diversity, and joining sequences and accompanying functions that enable both the extraction of and comparison between immune V-D-J genomic segments from a variety of species. Sources include IMGT from MP Lefranc (2009) <doi:10.1093/nar/gkn838> and Vgenerepertoire from publication DN Olivieri (2014) <doi:10.1007/s00251-014-0784-3>.

Authors:Alexander Yermanos

VDJgermlines_0.1.tar.gz
VDJgermlines_0.1.zip(r-4.5)VDJgermlines_0.1.zip(r-4.4)VDJgermlines_0.1.zip(r-4.3)
VDJgermlines_0.1.tgz(r-4.4-any)VDJgermlines_0.1.tgz(r-4.3-any)
VDJgermlines_0.1.tar.gz(r-4.5-noble)VDJgermlines_0.1.tar.gz(r-4.4-noble)
VDJgermlines_0.1.tgz(r-4.4-emscripten)VDJgermlines_0.1.tgz(r-4.3-emscripten)
VDJgermlines.pdf |VDJgermlines.html
VDJgermlines/json (API)

# Install 'VDJgermlines' in R:
install.packages('VDJgermlines', repos = c('https://alexyermanos.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 3 scripts 119 downloads 3 exports 6 dependencies

Last updated 6 years agofrom:a2e337c58b. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winOKNov 18 2024
R-4.5-linuxOKNov 18 2024
R-4.4-winOKNov 18 2024
R-4.4-macOKNov 18 2024
R-4.3-winOKNov 18 2024
R-4.3-macOKNov 18 2024

Exports:extractSequencesRVDJheatmapVDJphylo

Dependencies:apedigestlatticenlmeRcppstringdist